My understanding is that, you have DUAL FV15HP and a MiniDsp2X4Hd & Umik-1. If so, they you have all the necessary equipments to caliborate your sub to a very flat response within +3 to -3 db from 10hz to 80hz.
Caliborating the sub is mostly trial and error method but you just have to remember what to adjust.
If you don't have placement freedom of the subwoofers then place each(2) subs in the available but different location. Nver stack the subs as stacking the subs will defeate the purpose of multiple subs, which is producing smooth and even response.
Connect the minidsp using single sub out from the AVR because it will be easy if you are planning to use BEQ in the future, which can be included in the Input section of the sub.
Connect each sub to separate output section of the Minidsp and enable those sections only and disable the remaining 2 lines etc. and run a sweep. Infact, you will have to run a REW sweep each time to see if there is any improvement.
Now try changing the timing of one sub by 1ms in the output section of the Minidsp app(For Reference: 1milli second delay = One feet distance) and see if the graph improves. You can also inverse one sub and check for improvement.